Publications 2000-2001

Schacherer, F. Choi, C., Götze, U., Krull, M., Pistor, S. and Wingender, E.:
The TRANSPATH signal transduction database: a knowledge base on signal transduction networks.
Bioinformatics 17 1053-1057 (2001). Medline

Potapov, A. and Wingender, E.:
Modeling the architecture of regulatory networks.
Computer Science and Biology. Proceedings of the German Conference on Bioinformatics (GCB 2001).
E. Wingender, R. Hofestädt, I. Liebich (eds.). GBF-Braunschweig, pp.6-10 (2001). html

Kel, A., Kel-Margoulis, O., Ivanova, T. and Wingender, E.:
ClusterScan: A tool for automatic annotation of genomic regulatory sequences by searching for composite clusters.
Computer Science and Biology. Proceedings of the German Conference on Bioinformatics (GCB 2001). E. Wingender, R. Hofestädt, I. Liebich (eds.). GBF-Braunschweig, pp. 96-101 (2001). html

Kel, A. E., Kel-Margoulis, O. V., Farnham, P. J., Wingender, E. and Zhang, M. Q.:
Computer-assisted identification of cell cycle-related genes - new targets for E2F transcription factors.
J. Mol. Biol. 309, 99-120 (2001). Medline

Hehl, R. and Wingender, E.:
Database assisted promoter analysis.
Trends in Plant Sciences 6, 251-254 (2001). Medline

Wingender, E., Chen, X., Fricke, E., Geffers, R., Hehl, R., Liebich, I., Krull, M., Matys, V., Michael, H., Ohnhäuser, R., Prüß, M., Schacherer, F., Thiele, S. and Urbach, S.:
The TRANSFAC system on gene expression regulation.
Nucleic Acids Res. 29, 281-283 (2001).Medline

Wingender, E.:
The TRANSFAC System on Gene Regulation
Trends in Glycoscience and Glycotechnology 12, 255-264 (2000). pdf

Roulet, E., Bucher, P., Schneider, R., Wingender, E., Dusserre, Y.,Werner, T. and Mermod, N.:
Experimental analysis and computer prediction of CTF/NFI Transcription Factor DNA binding sites.
J. Mol. Biol. 297, 833-848 (2000). Medline

Wingender, E., Chen, X., Hehl, R., Karas, H., Liebich, I., Matys, V., Meinhardt, T., Prüß, M., Reuter, I. and Schacherer, F.:
TRANSFAC: an integrated system for gene expression regulation
Nucleic Acids Res. 28, 316-319 (2000). Medline

Kel-Margoulis, O. V., Romashchenko, A. G., Kolchanov, N. A., Wingender, E. and Kel, A. E.:
COMPEL: a database on composite regulatory elements providingcombinatorial transcriptional regulation
Nucleic Acids Res. 28, 311-315 (2000). Medline