Publications 2008-2009

Goemann, B., Potapov, A. P., Ante, M. and Wingender, E.:
Comparative analysis of topological patterns in different mammalian networks
Genome Inf. Ser. 23, 32 (2009). link

Goemann, B., Wingender, E. and Potapov, A. P.:
An approach to evaluate the topological significance of motifs and other patterns in regulatory networks
BMC Syst. Biol. 3, 53 (2009). link

Kel, A., Voss, N., Valeev, T., Stegmaier, P., Kel-Margoulis, O. and Wingender,E.:
ExPlain: finding upstream drug targets in disease gene regulatory networks
SAR QSAR Environ Res. 19, 481-494 (2008). link

Michael, H., Hogan, J., Kel, A., Kel-Margoulis, O., Schacherer, F. and Wingender, E.:
Building a knowledge base for systems pathology
Brief. Bioinformatics 9, 518-31 (2008).
doi:10.1093/bib/bbn038 link

Potapov, A. P., Goemann, B. and Wingender, E.:
The pairwise disconnectivity index as a new metric for the topological analysis of regulatory networks
BMC Bioinformatics 9, 227 (2008). link

Potapov, A. P.:
Signal transduction and gene regulation networks
In: Analysis of Biological Networks (Eds Junker, B.H. and Schreiber, F.)
Hoboken, New Jersey: Wiley-Interscience. 183-206 (2008).

Wingender, E.:
TRANSFAC project as an example of framework technology that supports
the analysis of genomic regulation

Brief. Bioinformatics 9, 326-332 (2008). link

Zubarev, R. A., Nielsen, M. L., Fung, E. M., Savitski, M. M., Kel-Margoulis, O., Wingender, E. and Kel, A.:
Identification of dominant signaling pathways from proteomics expression data
J. Proteom. 71, 89-96 (2008). link

Dönitz, J., Goemann, B., Lizé, M., Michael, H., Sasse, N., Wingender, E. and Potapov, A. P.:
EndoNet: An information resource about regulatory networks of cell-to-cell communication
Nucleic Acids Res. 36, D689-D694 (2008). link