Publications 2014-2015

Meckbach, C., Tacke, R., Hua, X., Waack, S., Wingender, E. and Gültas, M.:
PC-TraFF: Identification of potentially collaborating transcription factors using pointwise mutual information

BMC Bioinformatics 16, 400 (2015).
doi: 10.1186/s12859-015-0827-2  link

Schmitt-Engel, C., Schultheis, D., Schwirz, J., Ströhlein, N., Troelenberg, N., Majumdar, U., Dao, V.A., Grossmann, D., Richter, T., Tech, M., Dönitz, J., Gerischer, L., Theis, M., Schild, I., Trauner, J., Koniszewski, N.D., Küster, E., Kittelmann, S., Hu, Y., Lehmann, S., Siemanowski, J., Ulrich, J., Panfilio, K.A., Schröder, R., Morgenstern, B., Stanke, M., Buchhholz, F., Frasch, M., Roth, S., Wimmer, E.A., Schoppmeier, M., Klingler, M. and Bucher, G.:
The iBeetle large-scale RNAi screen reveals gene functions for insect development and physiology

Nat. Commun. 6, 7882 (2015).
doi: 10.1038/ncomms8822  link

Bhar, A., Haubrock, M., Mukhopadhyay, A. and Wingender, E:
Multiobjective triclustering of time-series transcriptome data reveals key genes of biological processes

BMC Bioinformatics 16, 200 (2015).
doi:10.1186/s12859-015-0635-8  link

Koschmann, J., Bhar, A., Stegmaier,P., Kel, A.E. and Wingender, E.:
“Upstream Analysis”: An integrated promoter-pathway analysis approach to causal interpretation of microarray data
Microarrays 4, 270-286 (2015).
doi:10.3390/microarrays4020270  link

Dalila, N., Brockmöller, J., Tzvetkov, M.V., Schirmer, M., Haubrock, M., and Vormfelde, S.V.:
Impact of mineralocorticoid receptor polymorphisms on urinary electrolyte excretion with and without diuretic drugs

Pharmacogenomics 16, 115-127 (2015).
doi:10.2217/pgs.14.163  link

Wingender, E., Schoeps, T., Haubrock, M. and Dönitz, J.:
TFClass: a classification of human transcription factors and their rodent orthologs

Nucleic Acids Res. 43, D97-D102 (2015).
doi: 10.1093/nar/gku1064  link

Dong, Z., Wang, K., Dang, T.K.L., Gültas, M., Welter, M., Stanke, M. and Waack, S.:
CRF-based moels of protein surfaces improve protein-protein interaction site predictions

BMC Bioinformatics 15, 277 (2014).
doi:10.1186/1471-2105-15-277  link

Dönitz, J. and Wingender, E.:
EndoNet: An information resource about the intercellular signaling network

BMC Systems Biol. 8, 49 (2014).
doi:10.1186/1752-0509-8-49  link

Gültas, M., Düzügun, G., Herzog, S.J., Meckbach, C., Wingender, E. and Waack, S.:
Quantum Coupled Mutation Finder: predicting functionally or strucurally important sites in proteins using quantum Jensen-Shannon divergence and CUDA programming

BMC Bioinformatics 15, 96 (2014).
doi:10.1186/1471-2105-15-96  link

Fuchs, M.:
Equivariant K-homology of Bianchi groups in the case of non-trivial class group
Münster Journal of Mathematics 7, 589 (2014). link